But there's this, and it really can't be avoided in tube guitar amps:look, i am an old man and therefore transparency is a straight wire with gain. i have a rolls di that belonged to alan parsons (also an old man) and when we spoke about it back in the 90s he agreed with me.
Most tube amps are based on an RCA 1930s radio circuit design that always had significant distortion, on the order of 10% or more THD even played squeaky-clean. That THD level is ALWAYS going to color the tone of the instrument.
Throw in a speaker, which adds its own distortion, and a speaker cabinet that adds its color, and there's no such thing as a transparent amp.
However, I'm using the term 'transparent' in a relative sense, since a truly transparent tube amp would be a high fidelity direct box, or something like an Audio Research tube preamp and tube power amp through a high fidelity speaker (not all tube circuits distort very much, the high fidelity tube amps started being made in the late '50s and '60s).
So I'll reiterate:
With a transparent amp, you hear whatever the coloration and distortion the amp adds, but you ALSO hear the tone of the guitar quite clearly.