Well, that'd be true of any amp, since most of the guitar's range is below 1Khz. The open high E's frequency is only about 330 Hz. High E 12th fret is about 660 Hz.
At the 24th fret the high E is about 1.3 Khz.
The low E's fundamental is around 82 Hz. Of COURSE your amp likes to play below 1000Khz!
Obviously harmonic overtones play a big role in any instrument, but mostly the amp is working below 1Khz, and can't actually reproduce anything over 5Khz due to its own frequency response limitations. By that time, the high frequencies are relatively attenuated compared to the lower ones anyway.