What you said is what I meant. The maple is stained. The burst is a colored top coat. Then clear is applied.
I took the OP's post to mean they didn't like how the burst layer looked. The burst layer will always appear to be suspended on top of the base color (because it is), and that effect is probably exaggerated by the visual depth added from dying the flame maple.
It's possible the SE's do something different with the maple veneers to save money, though. And as I understand, spraying a burst is a bit of an art. If it isn't done just right, the transition won't be smooth, which might be what the OP has noticed.